Mechanistic insight in the selective delignification of wheat straw by three white-rot fungal species through quantitative 13C-IS py-GC-MS and whole cell wall HSQC NMR.
Identifieur interne : 000399 ( Main/Exploration ); précédent : 000398; suivant : 000400Mechanistic insight in the selective delignification of wheat straw by three white-rot fungal species through quantitative 13C-IS py-GC-MS and whole cell wall HSQC NMR.
Auteurs : Gijs Van Erven [Pays-Bas] ; Nazri Nayan [Pays-Bas] ; Anton S M. Sonnenberg [Pays-Bas] ; Wouter H. Hendriks [Pays-Bas] ; John W. Cone [Pays-Bas] ; Mirjam A. Kabel [Pays-Bas]Source :
- Biotechnology for biofuels [ 1754-6834 ] ; 2018.
Abstract
Background
The white-rot fungi
Results
Wheat straw treated by two strains of
Conclusions
DOI: 10.1186/s13068-018-1259-9
PubMed: 30263063
PubMed Central: PMC6156916
Affiliations:
Links toward previous steps (curation, corpus...)
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Sonnenberg</name><affiliation wicri:level="1"><nlm:affiliation>3Plant Breeding, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>3Plant Breeding, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea><wicri:noRegion>6708 PB Wageningen</wicri:noRegion></affiliation></author><author><name sortKey="Hendriks, Wouter H" sort="Hendriks, Wouter H" uniqKey="Hendriks W" first="Wouter H" last="Hendriks">Wouter H. Hendriks</name><affiliation wicri:level="1"><nlm:affiliation>2Animal Nutrition Group, Wageningen University & Research, De Elst 1, 6708 WD Wageningen, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>2Animal Nutrition Group, Wageningen University & Research, De Elst 1, 6708 WD Wageningen</wicri:regionArea><wicri:noRegion>6708 WD Wageningen</wicri:noRegion></affiliation></author><author><name sortKey="Cone, John W" sort="Cone, John W" uniqKey="Cone J" first="John W" last="Cone">John W. Cone</name><affiliation wicri:level="1"><nlm:affiliation>2Animal Nutrition Group, Wageningen University & Research, De Elst 1, 6708 WD Wageningen, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>2Animal Nutrition Group, Wageningen University & Research, De Elst 1, 6708 WD Wageningen</wicri:regionArea><wicri:noRegion>6708 WD Wageningen</wicri:noRegion></affiliation></author><author><name sortKey="Kabel, Mirjam A" sort="Kabel, Mirjam A" uniqKey="Kabel M" first="Mirjam A" last="Kabel">Mirjam A. Kabel</name><affiliation wicri:level="1"><nlm:affiliation>1Laboratory of Food Chemistry, Wageningen University & Research, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>1Laboratory of Food Chemistry, Wageningen University & Research, Bornse Weilanden 9, 6708 WG Wageningen</wicri:regionArea><wicri:noRegion>6708 WG Wageningen</wicri:noRegion></affiliation></author></analytic><series><title level="j">Biotechnology for biofuels</title><idno type="ISSN">1754-6834</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>Background</b></p><p>The white-rot fungi </p></div><div type="abstract" xml:lang="en"><p><b>Results</b></p><p>Wheat straw treated by two strains of </p></div><div type="abstract" xml:lang="en"><p><b>Conclusions</b></p><p></p></div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">30263063</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1754-6834</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2018</Year></PubDate></JournalIssue><Title>Biotechnology for biofuels</Title><ISOAbbreviation>Biotechnol Biofuels</ISOAbbreviation></Journal><ArticleTitle>Mechanistic insight in the selective delignification of wheat straw by three white-rot fungal species through quantitative <sup>13</sup>C-IS py-GC-MS and whole cell wall HSQC NMR.</ArticleTitle><Pagination><MedlinePgn>262</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s13068-018-1259-9</ELocationID><Abstract><AbstractText Label="Background" NlmCategory="UNASSIGNED">The white-rot fungi <i>Ceriporiopsis subvermispora</i> (<i>Cs</i>), <i>Pleurotus eryngii</i> (<i>Pe</i>), and <i>Lentinula edodes</i> (<i>Le</i>) have been shown to be high-potential species for selective delignification of plant biomass. This delignification improves polysaccharide degradability, which currently limits the efficient lignocellulose conversion into biochemicals, biofuels, and animal feed. Since selectivity and time efficiency of fungal delignification still need optimization, detailed understanding of the underlying mechanisms at molecular level is required. The recently developed methodologies for lignin quantification and characterization now allow for the in-depth mapping of fungal modification and degradation of lignin and, thereby, enable resolving underlying mechanisms.</AbstractText><AbstractText Label="Results" NlmCategory="UNASSIGNED">Wheat straw treated by two strains of <i>Cs</i> (<i>Cs1</i> and <i>Cs12)</i>, <i>Pe</i> (<i>Pe3</i> and <i>Pe6)</i> and <i>Le</i> (<i>Le8</i> and <i>Le10)</i> was characterized using semi-quantitative py-GC-MS during fungal growth (1, 3, and 7 weeks). The remaining lignin after 7 weeks was quantified and characterized using <sup>13</sup>C lignin internal standard based py-GC-MS and whole cell wall HSQC NMR. Strains of the same species showed similar patterns of lignin removal and degradation. <i>Cs</i> and <i>Le</i> outperformed <i>Pe</i> in terms of extent and selectivity of delignification (<i>Cs </i>≥<i> Le </i>>><i> Pe)</i>. The highest lignin removal [66% (w/w); <i>Cs</i>1] was obtained after 7 weeks, without extensive carbohydrate degradation (factor 3 increased carbohydrate-to-lignin ratio). Furthermore, though after treatment with <i>Cs</i> and <i>Le</i> comparable amounts of lignin remained, the structure of the residual lignin vastly differed. For example, C<sub>α</sub>-oxidized substructures accumulated in <i>Cs</i> treated lignin up to 24% of the total aromatic lignin, a factor two higher than in <i>Le</i>-treated lignin. Contrarily, ferulic acid substructures were preferentially targeted by <i>Le</i> (and <i>Pe</i>). Interestingly, <i>Pe</i>-spent lignin was specifically depleted of tricin (40% reduction). The overall subunit composition (H:G:S) was not affected by fungal treatment.</AbstractText><AbstractText Label="Conclusions" NlmCategory="UNASSIGNED"><i>Cs</i> and <i>Le</i> are both able to effectively and selectively delignify wheat straw, though the underlying mechanisms are fundamentally different. We are the first to identify that <i>Cs</i> degrades the major <i>β</i>-<i>O</i>-4 ether linkage in grass lignin mainly via C<sub>β</sub>-<i>O</i>-aryl cleavage, while C<sub>α</sub>-C<sub>β</sub> cleavage of inter-unit linkages predominated for <i>Le.</i> Our research provides a new insight on how fungi degrade lignin, which contributes to further optimizing the biological upgrading of lignocellulose.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>van Erven</LastName><ForeName>Gijs</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>1Laboratory of Food Chemistry, Wageningen University & Research, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands.</Affiliation><Identifier Source="ISNI">0000 0001 0791 5666</Identifier><Identifier Source="GRID">grid.4818.5</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nayan</LastName><ForeName>Nazri</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>2Animal Nutrition Group, Wageningen University & Research, De Elst 1, 6708 WD Wageningen, The Netherlands.</Affiliation><Identifier Source="ISNI">0000 0001 0791 5666</Identifier><Identifier Source="GRID">grid.4818.5</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sonnenberg</LastName><ForeName>Anton S M</ForeName><Initials>ASM</Initials><AffiliationInfo><Affiliation>3Plant Breeding, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.</Affiliation><Identifier Source="ISNI">0000 0001 0791 5666</Identifier><Identifier Source="GRID">grid.4818.5</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hendriks</LastName><ForeName>Wouter H</ForeName><Initials>WH</Initials><AffiliationInfo><Affiliation>2Animal Nutrition Group, Wageningen University & Research, De Elst 1, 6708 WD Wageningen, The Netherlands.</Affiliation><Identifier Source="ISNI">0000 0001 0791 5666</Identifier><Identifier Source="GRID">grid.4818.5</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cone</LastName><ForeName>John W</ForeName><Initials>JW</Initials><AffiliationInfo><Affiliation>2Animal Nutrition Group, Wageningen University & Research, De Elst 1, 6708 WD Wageningen, The Netherlands.</Affiliation><Identifier Source="ISNI">0000 0001 0791 5666</Identifier><Identifier Source="GRID">grid.4818.5</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kabel</LastName><ForeName>Mirjam A</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>1Laboratory of Food Chemistry, Wageningen University & Research, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands.</Affiliation><Identifier Source="ISNI">0000 0001 0791 5666</Identifier><Identifier Source="GRID">grid.4818.5</Identifier></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>09</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Biotechnol Biofuels</MedlineTA><NlmUniqueID>101316935</NlmUniqueID><ISSNLinking>1754-6834</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Ceriporiopsis subvermispora</Keyword><Keyword MajorTopicYN="N">Cα-oxidation</Keyword><Keyword MajorTopicYN="N">Lentinula edodes</Keyword><Keyword MajorTopicYN="N">Lignin degradation</Keyword><Keyword MajorTopicYN="N">Lignin quantification</Keyword><Keyword MajorTopicYN="N">Ligninolytic enzymes</Keyword><Keyword MajorTopicYN="N">Pleurotus eryngii</Keyword><Keyword MajorTopicYN="N">Selectivity</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>07</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>09</Month><Day>11</Day></PubMedPubDate><PubMedPubDate 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Cone</name><name sortKey="Hendriks, Wouter H" sort="Hendriks, Wouter H" uniqKey="Hendriks W" first="Wouter H" last="Hendriks">Wouter H. Hendriks</name><name sortKey="Kabel, Mirjam A" sort="Kabel, Mirjam A" uniqKey="Kabel M" first="Mirjam A" last="Kabel">Mirjam A. Kabel</name><name sortKey="Nayan, Nazri" sort="Nayan, Nazri" uniqKey="Nayan N" first="Nazri" last="Nayan">Nazri Nayan</name><name sortKey="Sonnenberg, Anton S M" sort="Sonnenberg, Anton S M" uniqKey="Sonnenberg A" first="Anton S M" last="Sonnenberg">Anton S M. Sonnenberg</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|texte= Mechanistic insight in the selective delignification of wheat straw by three white-rot fungal species through quantitative 13C-IS py-GC-MS and whole cell wall HSQC NMR.
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